Insertion junction: LMJ.RY0402.163482_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.163482
Chromosome:chromosome 10
Location:3257500
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre10.g443100 (1 of 1) IPR001214//IPR023220 - SET domain // Type IV secretion system, VirB5-domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGTTGCCAGGAACGGGCTGCGGTTGGCG
Internal bar code:AATGTGGCGCTTCAATAATTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1060
LEAP-Seq percent confirming:94.8475
LEAP-Seq n confirming:1399
LEAP-Seq n nonconfirming:76
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:AGTCTGGCAGCAGGTGATTT
Suggested primer 2:GGAATGTTGTCGCGTACCTT