Insertion junction: LMJ.RY0402.165388_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.165388
Chromosome:chromosome 8
Location:3537287
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre08.g375400 GSM1 (1 of 1) PTHR11850//PTHR11850:SF102 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS // SUBFAMILY NOT NAMED; Gamete-specific minus 1 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCACTCGTCGTTCTGATCATGACACGAT
Internal bar code:GATGGGTAATTAGGTTATATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1102
LEAP-Seq percent confirming:99.452
LEAP-Seq n confirming:12159
LEAP-Seq n nonconfirming:67
LEAP-Seq n unique pos:100

Suggested primers for confirmation by PCR

Suggested primer 1:CCGGTTTTATGCTGTCAGGT
Suggested primer 2:GTTGGTTGCAATGGCCTAGT