Insertion junction: LMJ.RY0402.171701_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.171701
Chromosome:chromosome 13
Location:2408221
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre13.g579598 SSS3B,SSS3 (1 of 2) PTHR12526//PTHR12526:SF341 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED; Soluble starch synthase III intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCCGTAAGGAAACAAGGCGTGTAGGGTG
Internal bar code:AGTTCGGGCCCGCGTTTGTACC

Confirmation - LEAP-Seq

LEAP-Seq distance:872
LEAP-Seq percent confirming:99.8825
LEAP-Seq n confirming:850
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:AAGACGCAAACATTATGGGC
Suggested primer 2:GTGGGAGATAGATGGGGGAT