Insertion junction: LMJ.RY0402.177485_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.177485
Chromosome:chromosome 4
Location:1247417
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g215150 SSS1B,SSS1,SSIb (1 of 1) IPR023159 - SO1590-like domain; Soluble starch synthase IB intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCATATGCAACGTAATTTAATGTCAGAT
Internal bar code:CAGTCGACGAATTTGGCTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:336
LEAP-Seq percent confirming:99.2256
LEAP-Seq n confirming:1025
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCTCTGACACGCACTGAC
Suggested primer 2:CCCAAACTCCTACCCTCCTC