Insertion junction: LMJ.RY0402.188012_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.188012
Chromosome:chromosome 3
Location:7919073
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre03.g202300 (1 of 3) IPR000104//IPR001859 - Antifreeze protein, type I // Trypanosoma cruzi ribosomal protein P2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTCCTCCACATATGCTGCATCGCCTGGC
Internal bar code:CACAGACGGTGTAGCGATGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:228
LEAP-Seq percent confirming:99.7056
LEAP-Seq n confirming:6096
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAGCCTTTTGAAGTTGCC
Suggested primer 2:TTCACCATCCTGTCAGACGA