Insertion junction: LMJ.RY0402.188607_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.188607
Chromosome:chromosome 4
Location:2083059
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGTACGGGTGTGGTGTTGGATGTGGTTG
Internal bar code:TCAGGACAGTCGTTTCTAGACT

Confirmation - LEAP-Seq

LEAP-Seq distance:853
LEAP-Seq percent confirming:99.3701
LEAP-Seq n confirming:3313
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:TAAGGGTGTGTAGGGCAAGG
Suggested primer 2:CAGGCATAATCCGACAACCT