Insertion junction: LMJ.RY0402.195255_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.195255
Chromosome:chromosome 4
Location:2072266
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g219150 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAGATGGCGATGAGGCTGCGCCAGACGT
Internal bar code:AGGGAGTCTAACTAGGGCGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:843
LEAP-Seq percent confirming:99.7727
LEAP-Seq n confirming:6583
LEAP-Seq n nonconfirming:15
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CTCATCGAGCCAATCCAAGT
Suggested primer 2:TGCTTCACTTGACTGCTGCT