Insertion junction: LMJ.RY0402.197372_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.197372
Chromosome:chromosome 10
Location:2325420
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre10.g434850 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCGGGCCAGCAGCAGCAGGTTCCATGGG
Internal bar code:TGAGCTCAGGACCGGTTCTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:490
LEAP-Seq percent confirming:97.3451
LEAP-Seq n confirming:110
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGTGTCATGTCCGACAAC
Suggested primer 2:TATCCAGTGGCGATGTTGTC