Insertion junction: LMJ.RY0402.199176_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.199176
Chromosome:chromosome 4
Location:3340152
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g227251 (1 of 1) IPR006626//IPR008752//IPR011050//IPR029018 - Parallel beta-helix repeat // Peptidase M11, gametolysin // Pectin lyase fold/virulence factor // Chitobiase/beta-hexosaminidase domain 2-like intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAAAAATTACTCAGCATTTCCCACAGAAA
Internal bar code:AGCCGGCAATATCGATGCAACG

Confirmation - LEAP-Seq

LEAP-Seq distance:636
LEAP-Seq percent confirming:94.0966
LEAP-Seq n confirming:1052
LEAP-Seq n nonconfirming:66
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:GCAATGATGGTGGACTTGTG
Suggested primer 2:GAGACGCAACACTGCCTGTA