Insertion junction: LMJ.RY0402.200788_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.200788
Chromosome:chromosome 10
Location:3257550
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre10.g443100 (1 of 1) IPR001214//IPR023220 - SET domain // Type IV secretion system, VirB5-domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCCAAAAACGGAAGGGGGACACGGCGCA
Internal bar code:CAGTTGCCGGGGGTCTTTTCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1166
LEAP-Seq percent confirming:98.6667
LEAP-Seq n confirming:148
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GGAATGTTGTCGCGTACCTT
Suggested primer 2:AGTCTGGCAGCAGGTGATTT