Insertion junction: LMJ.RY0402.205612_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.205612
Chromosome:chromosome 6
Location:2620425
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre06.g269752 TRXm,TRXM1,TRX15 (1 of 1) IPR000104//IPR005746//IPR012336//IPR013766 - Antifreeze protein, type I // Thioredoxin // Thioredoxin-like fold // Thioredoxin domain; Thioredoxin m, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACTGGTCGGTGTGGGGGCGAACGCACAAC
Internal bar code:ACTCGGGGGCGCAGACCGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:830
LEAP-Seq percent confirming:98.1801
LEAP-Seq n confirming:4262
LEAP-Seq n nonconfirming:79
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:AAACAAGGGAAGGGAGAGGA
Suggested primer 2:TGTTGGTAGCTGAGGCACTG