Insertion junction: LMJ.RY0402.218468_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.218468
Chromosome:chromosome 17
Location:4607333
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre17.g733100 (1 of 1) IPR000104//IPR003882 - Antifreeze protein, type I // Pistil-specific extensin-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGCACACGTGTCACAGAATAGATATGGTC
Internal bar code:AGGTCGGATCTGGTTGTACGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:682
LEAP-Seq percent confirming:99.586
LEAP-Seq n confirming:3849
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCTGAAAATCTGTGGGGT
Suggested primer 2:GGATTCAGGAGGCATTCAAA