Insertion junction: LMJ.RY0402.218546_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.218546
Chromosome:chromosome 6
Location:2619057
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre06.g269752 TRXm,TRXM1,TRX15 (1 of 1) IPR000104//IPR005746//IPR012336//IPR013766 - Antifreeze protein, type I // Thioredoxin // Thioredoxin-like fold // Thioredoxin domain; Thioredoxin m, chloroplastic 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATTTGCATGACGCAGGCACGGCTCGGCTG
Internal bar code:CTCTAGGCGCAAGCACCACTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:947
LEAP-Seq percent confirming:99.6723
LEAP-Seq n confirming:11558
LEAP-Seq n nonconfirming:38
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:TCCTCTCCCTTCCCTTGTTT
Suggested primer 2:CTACATGCGCACGACTGATT