Insertion junction: LMJ.RY0402.234701_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.234701
Chromosome:chromosome 3
Location:5439039
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre03.g185150 (1 of 11) IPR023109 - Integrase/recombinase, N-terminal 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCGTTTGCCCCCCGTGTGCGCACCCCTG
Internal bar code:ATTACGTATCAGTATTTTCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:972
LEAP-Seq percent confirming:99.0398
LEAP-Seq n confirming:5879
LEAP-Seq n nonconfirming:57
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:AAGAAGGACAAGGTGAGCGA
Suggested primer 2:GGAGTGTCGCTCCTGCTATC