Insertion junction: LMJ.RY0402.235565_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.235565
Chromosome:chromosome 10
Location:2325757
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre10.g434850 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGGCTGCAGTCTCGGGCGGAGGCGTGGCC
Internal bar code:TCCGAGTACTCGACGAAATTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:326
LEAP-Seq percent confirming:95.3488
LEAP-Seq n confirming:82
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:TATCCAGTGGCGATGTTGTC
Suggested primer 2:AGGAGCCGTATGTGTTCCTG