Insertion junction: LMJ.RY0402.235915_1

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:+
Strain:LMJ.RY0402.235915
Chromosome:chromosome 1
Location:5552016
Confidence (%):73
Locus systematic id Locus common name Defline Feature
Cre01.g039450 (1 of 2) PTHR34548//PTHR34548:SF2 - FAMILY NOT NAMED // PROTEIN TIC 21, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAGCGCGTGGTTGGTCCGGTGGTGTGTGC
Internal bar code:GTTGCAAGGGACGTTTAAAAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:594
LEAP-Seq percent confirming:98.6076
LEAP-Seq n confirming:1558
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGGGCAAATTTACGTTCT
Suggested primer 2:CAGCCGTAGTCTCGGAAGTC