Insertion junction: LMJ.RY0402.238838_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.238838
Chromosome:chromosome 10
Location:2331395
Confidence (%):58
Locus systematic id Locus common name Defline Feature
Cre10.g434850 (1 of 14) IPR006626//IPR011050 - Parallel beta-helix repeat // Pectin lyase fold/virulence factor CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCGGGATCTGGATCTGGGTCGGCCGATCC
Internal bar code:GGCACATCCCTATAACGGGTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:410
LEAP-Seq percent confirming:98.8235
LEAP-Seq n confirming:84
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:GGGGAGGAGGGGTGTAAATA
Suggested primer 2:GCACGTGCTCTCATCAAAAA