Insertion junction: LMJ.RY0402.239491_2

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:-
Strain:LMJ.RY0402.239491
Chromosome:chromosome 11
Location:1400621
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre11.g467721 (1 of 1) IPR027446 - Variant surface glycoprotein C-terminal domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGTCGGTAGAGCACCCGCCAGCGGCCAT
Internal bar code:TACGTGAGGGCGCATTTACGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:967
LEAP-Seq percent confirming:98.3333
LEAP-Seq n confirming:118
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:1

Suggested primers for confirmation by PCR

Suggested primer 1:ATGCACCACACAGGAATGAA
Suggested primer 2:TACCCAAAAGTAAGCCACGG