Insertion junction: LMJ.RY0402.239694_2

Overview

Insertion cassette:CIB1
Side of cassette:3'
Strand:-
Strain:LMJ.RY0402.239694
Chromosome:chromosome 12
Location:4486520
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre12.g521700 SSS6,SSS1A Soluble starch synthase IA; (1 of 5) K00703 - starch synthase (E2.4.1.21, glgA) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAAACACACGCCGGAGTCATCGGCTGCTGC
Internal bar code:GAGGGTGGATCCACAGTCGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:92
LEAP-Seq percent confirming:98.1132
LEAP-Seq n confirming:52
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:AGTCTGATGGACACGTGCAG
Suggested primer 2:TACACCCTCACACCCGTACA