Insertion junction: LMJ.RY0402.249525_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.249525
Chromosome:chromosome 1
Location:3987509
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre01.g025950 PPR8 (1 of 1) IPR000209//IPR002885 - Peptidase S8/S53 domain // Pentatricopeptide repeat; PentatricoPeptide Repeat protein 8 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAACGCCGGCACACCCTACCGCCGCAAGCG
Internal bar code:GTTGTTGATGGGACGCAACGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:494
LEAP-Seq percent confirming:99.0155
LEAP-Seq n confirming:704
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:CTTTTAGGGGTGTCCGTGAA
Suggested primer 2:AACGGCAGCTGCTTAGTGAT