Insertion junction: LMJ.RY0402.254546_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.254546
Chromosome:chromosome 3
Location:7691874
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre03.g203730 DEGO1,DEG12 Inactive Deg protease; (1 of 4) PTHR22939//PTHR22939:SF83 - SERINE PROTEASE FAMILY S1C HTRA-RELATED // PROTEASE DO-LIKE 2, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTTCAAGGACCGCCAGGTACTGGCTGAC
Internal bar code:TGAATTCATGGTGAACGAATCA

Confirmation - LEAP-Seq

LEAP-Seq distance:468
LEAP-Seq percent confirming:99.563
LEAP-Seq n confirming:5012
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TACATCACGCTGGAGCTGTC
Suggested primer 2:GAATCAATGACCCCACCAAC