Gene: Cre10.g430900

Overview

Common name:
Defline:	(1 of 1) IPR000104//IPR007259 - Antifreeze protein, type I // Gamma-tubulin complex component protein
Description:
Synonyms:	g10640.t1
Chromosome:	chromosome 10

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.017399_1	CLIP2.017399	intron	80	6.1
CLIP2.017399_2	CLIP2.017399	intron	80	6.1
CLIP2.020965_1	CLIP2.020965	CDS	80	6.1
CLIP2.020965_2	CLIP2.020965	CDS	80	6.1
CLIP2.022323_1	CLIP2.022323	CDS	80	6.1
CLIP2.022323_2	CLIP2.022323	CDS	80	6.1
CLIP2.027166_1	CLIP2.027166	CDS	80	6.1
CLIP2.027166_2	CLIP2.027166	CDS	80	6.1
CLIP2.034901_1	CLIP2.034901	CDS	80	6.1
CLIP2.034901_2	CLIP2.034901	CDS	80	6.1
LMJ.RY0402.053444_1	LMJ.RY0402.053444	CDS	95	5.5
LMJ.RY0402.053444_2	LMJ.RY0402.053444	CDS	95	5.5
LMJ.RY0402.058301_1	LMJ.RY0402.058301	CDS	58	5.5
LMJ.RY0402.065879_1	LMJ.RY0402.065879	intron	73	5.5
LMJ.RY0402.077922_1	LMJ.RY0402.077922	CDS	95	5.5
LMJ.RY0402.077922_2	LMJ.RY0402.077922	intron	95	5.5
LMJ.RY0402.135153_1	LMJ.RY0402.135153	CDS	73	5.5
LMJ.RY0402.135153_2	LMJ.RY0402.135153	CDS	58	5.5
LMJ.RY0402.146057_1	LMJ.RY0402.146057	CDS	73	5.5
LMJ.RY0402.147335_1	LMJ.RY0402.147335	CDS	73	5.5
LMJ.RY0402.173761_2	LMJ.RY0402.173761	CDS	58	5.5
LMJ.RY0402.184636_1	LMJ.RY0402.184636	CDS	73	5.5
LMJ.RY0402.204125_1	LMJ.RY0402.204125	intron	73	5.5
LMJ.RY0402.214552_1	LMJ.RY0402.214552	CDS	73	5.5
LMJ.RY0402.217797_1	LMJ.RY0402.217797	CDS	95	5.5
LMJ.RY0402.217797_2	LMJ.RY0402.217797	CDS/intron	95	5.5
LMJ.RY0402.234994_1	LMJ.RY0402.234994	CDS	58	5.5

Gene Annotations

PFAM:	PF04130
PANTHER:	PTHR19302
KEGG_ec:
KEGG_orthology:
KOG:
Gene ontology terms::	GO:0000226, GO:0000922, GO:0005815, GO:0042309, GO:0050825, GO:0050826
Best arabidopsis TAIR name:	AT1G80260.1
Best arabidopsis TAIR symbol:	emb1427
Best arabidopsis TAIR defline:	Spc97 / Spc98 family of spindle pole body (SBP) component
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

High temperature, screen 1 of 7 ( 94% confidence (FDR = 0.051))

High temperature, screen 2 of 7 ( 91% confidence (FDR = 0.081))

Hydroxyurea, screen 1 of 2 ( 94% confidence (FDR = 0.059))

LAT003D02, screen 1 of 1 ( 99% confidence (FDR = 0.0028))

LAT030B09, screen 1 of 1 ( 95% confidence (FDR = 0.043))

LAT030E11, screen 1 of 1 ( 98% confidence (FDR = 0.011))

LAT032D03, screen 1 of 1 ( 93% confidence (FDR = 0.069))

LAT032H10, screen 1 of 1 ( 98% confidence (FDR = 0.019))

LAT034B04, screen 1 of 1 ( 87% confidence (FDR = 0.13))

LAT034H07, screen 1 of 1 ( 91% confidence (FDR = 0.083))

LAT035F03, screen 1 of 1 ( 99% confidence (FDR = 8.3e-05))

LAT035G03, screen 1 of 1 ( 83% confidence (FDR = 0.17))

LAT035H07, screen 1 of 1 ( 98% confidence (FDR = 0.015))

LAT041D10, screen 1 of 1 ( 83% confidence (FDR = 0.17))

LAT042C03, screen 1 of 1 ( 90% confidence (FDR = 0.096))

Limited growth in liquid media, screen 3 of 4 ( 84% confidence (FDR = 0.16))

Limited growth in liquid media, screen 4 of 4 ( 73% confidence (FDR = 0.27))

Low Termperature, screen 1 of 1 ( 99% confidence (FDR = 3.6e-08))

Photosynthesis or light sensitivity, screen 2 of 12 ( 94% confidence (FDR = 0.057))

Photosynthesis or light sensitivity, screen 4 of 12 ( 99% confidence (FDR = 0.0017))

Zeocin, screen 5 of 5 ( 90% confidence (FDR = 0.093))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.