Gene: Cre12.g538650
Overview
| Common name: | UPM3,SUMT3,COBA,HEM4 |
| Defline: | S-adenosyl-L-methionine-dependent uroporphyrinogen III methyltransferase; (1 of 1) 2.1.1.107 - Uroporphyrinogen-III C-methyltransferase / Uroporphyrinogen-III methyltransferase |
| Description: | Putative uroporphyrin III methyltransferase or synthase (part). [=HEMD; COBA; CYSG]. |
| Synonyms: | g13244.t1,SUMT3,HEM4,COBA |
| Chromosome: | chromosome 12 |
Protein Localization
A plasmid for expressing Cre12.g538650 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre12.g538650-Venus-3xFLAG
Imaged strain: CSI_LW05H1
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
shapes in cytoplasm/uncategorized shapes in cytoplasm
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.001161_2 | CLIP2.001161 | intron | 63 | 6.1 |
| CLIP2.002468_3 | CLIP2.002468 | intron | 80 | 6.1 |
| CLIP2.002468_4 | CLIP2.002468 | intron | 80 | 6.1 |
| CLIP2.005674_1 | CLIP2.005674 | CDS | 40 | 6.1 |
| LMJ.RY0402.044401_1 | LMJ.RY0402.044401 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.044401_2 | LMJ.RY0402.044401 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.118056_1 | LMJ.RY0402.118056 | CDS | 73 | 5.5 |
| LMJ.RY0402.149035_2 | LMJ.RY0402.149035 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.217703_1 | LMJ.RY0402.217703 | intron | 58 | 5.5 |
| LMJ.RY0402.228047_1 | LMJ.RY0402.228047 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.234224_1 | LMJ.RY0402.234224 | intron | 95 | 5.5 |
| LMJ.RY0402.234224_2 | LMJ.RY0402.234224 | intron | 95 | 5.5 |
Gene Annotations
| PFAM: | PF00590 |
| PANTHER: | PTHR21091 PTHR21091:SF113 |
| KEGG_ec: | EC:2.1.1.107 |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | GO:0006779, GO:0008152, GO:0008168, GO:0055114 |
| Best arabidopsis TAIR name: | AT5G40850.1 |
| Best arabidopsis TAIR symbol: | UPM1 |
| Best arabidopsis TAIR defline: | urophorphyrin methylase 1 |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.