Gene: Cre16.g663400
Overview
| Common name: | LCI11A,BST2,LCI11 |
| Defline: | Bestrophin 2; (1 of 10) PF01062 - Bestrophin, RFP-TM, chloride channel (Bestrophin) |
| Description: | Thylakoid membrane protein with 4 transmembrane helices, probably pentameric; present in pyrenoid-traversing thylakoids; induction by Low-CO2 is cia5-dependent; RNAi mutants show growth defects under low CO2; similar to Bestrophin, RFP-TM, a ubiquitous chloride channel; similar to Arabidopsis AT3G61320 and AT2G45870; part of a small multigene family; very similar to closely linked BST1 and BST3 |
| Synonyms: | g16016.t2,LCI11,LCI11A |
| Chromosome: | chromosome 16 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC1E03
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre16.g662600 | BST1,LCI11,LCI11C | Cre16.g663400 | LCI11A,BST2,LCI11 | Mackinder et al. 2017 |
| Cre16.g663450 | LCI11B,BST3,LCI11 | Cre16.g663400 | LCI11A,BST2,LCI11 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000563_1 | CLIP2.000563 | 3'UTR | 80 | 6.1 |
| CLIP2.000578_1 | CLIP2.000578 | 3'UTR | 80 | 6.1 |
| CLIP2.000578_2 | CLIP2.000578 | 3'UTR | 80 | 6.1 |
| CLIP2.000688_1 | CLIP2.000688 | CDS | 80 | 6.1 |
| CLIP2.000688_2 | CLIP2.000688 | CDS | 80 | 6.1 |
| CLIP2.000816_1 | CLIP2.000816 | 3'UTR | 80 | 6.1 |
| LMJ.RY0402.101408_1 | LMJ.RY0402.101408 | 5'UTR|outside_mRNA | 73 | 5.5 |
| LMJ.RY0402.154236_1 | LMJ.RY0402.154236 | 5'UTR_intron|outside_mRNA | 95 | 5.5 |
| LMJ.RY0402.154236_2 | LMJ.RY0402.154236 | 5'UTR_intron|outside_mRNA | 95 | 5.5 |
| LMJ.RY0402.214018_1 | LMJ.RY0402.214018 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.214018_2 | LMJ.RY0402.214018 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF01062 |
| PANTHER: | PTHR33281 PTHR33281:SF1 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT3G61320 |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | Bestrophin-like protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.