Gene: Cre16.g689650
Overview
| Common name: | ATG8,APG8 |
| Defline: | Autophagy-related protein; (1 of 1) K08341 - GABA(A) receptor-associated protein (GABARAP, ATG8, LC3) |
| Description: | Component of autophagosomes; unique ubiquitin-like protein whose conjugation target is lipid phosphatidylethanolamine (PE); Atg8p-PE is anchored to membranes, is involved in phagophore expansion, and may mediate membrane fusion during autophagosome formation; deconjugation of Atg8p-PE is required for efficient autophagosome biogenesis, degradation of lipid droplets and TAG upon resupply of N and for starch accumulation under P-starvation |
| Synonyms: | g16188.t1,APG8,Cre16.g689650.t1.1 |
| Chromosome: | chromosome 16 |
Protein Localization
A plasmid for expressing Cre16.g689650 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre16.g689650-Venus-3xFLAG
Imaged strain: CSI_LW11F4
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
cytosol/cytosol (strong signal)
nucleus/nucleoplasm
nucleus/nucleolus
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
We did not determine any protein-protein interactions for this gene.
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.009568_1 | CLIP2.009568 | intron | 80 | 6.1 |
| CLIP2.045920_1 | CLIP2.045920 | intron | 80 | 6.1 |
| CLIP2.045920_2 | CLIP2.045920 | intron | 80 | 6.1 |
| CLIP2.052558_1 | CLIP2.052558 | intron | 80 | 6.1 |
| CLIP2.055667_1 | CLIP2.055667 | intron | 80 | 6.1 |
| LMJ.RY0402.143543_1 | LMJ.RY0402.143543 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.143543_2 | LMJ.RY0402.143543 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.198147_2 | LMJ.RY0402.198147 | 3'UTR | 95 | 5.5 |
Gene Annotations
| PFAM: | PF04110 |
| PANTHER: | PTHR10969 PTHR10969:SF39 |
| KEGG_ec: | |
| KEGG_orthology: | K08341 |
| KOG: | KOG1654 |
| Gene ontology terms:: | GO:0000045, GO:0005737 |
| Best arabidopsis TAIR name: | AT4G16520 |
| Best arabidopsis TAIR symbol: | ATG8D |
| Best arabidopsis TAIR defline: | Ubiquitin-like superfamily protein |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.