Insertion junction: CLIP2.000104_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.000104
Chromosome:chromosome 6
Location:5990142
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g290400 HDA5 (1 of 1) PTHR10625:SF104 - HISTONE DEACETYLASE 6; RPD3/HDA1 type histone deacetylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCAAAGCTGTACTGTATTCGTTCTGCTGTTTCTGTGGTTTCTCCCTAG
Internal bar code:TGATGTGCAGTGAAGAGGTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:4510
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:92
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:92

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCCCTTACCTCAAGAACC
Suggested primer 2:ATGTACATGTGCGTGTGGGT