Gene: Cre06.g290400

Overview

Common name:HDA5
Defline:(1 of 1) PTHR10625:SF104 - HISTONE DEACETYLASE 6; RPD3/HDA1 type histone deacetylase
Description:Histone deacetylase. ChromDB HDA3413
Synonyms:g6736.t2,HDA5
Chromosome:chromosome 6

Protein Localization

A plasmid for expressing Cre06.g290400 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre06.g290400-Venus-3xFLAG

Imaged strain: CSI_LW06G9

Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.

Classification(s):

chloroplast/pyrenoid/pyrenoid matrix enriched

chloroplast/homogeneous

If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.

VenusChlorophyllBright fieldMerged

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.000104_1 CLIP2.000104 intron 80 6.1
CLIP2.000104_2 CLIP2.000104 intron 80 6.1
CLIP2.000220_1 CLIP2.000220 intron 80 6.1
CLIP2.000220_2 CLIP2.000220 intron 80 6.1
CLIP2.000350_1 CLIP2.000350 CDS 80 6.1
CLIP2.000350_2 CLIP2.000350 CDS 80 6.1
CLIP2.000728_1 CLIP2.000728 intron 80 6.1
CLIP2.000728_2 CLIP2.000728 intron 80 6.1
CLIP2.000979_1 CLIP2.000979 intron 80 6.1
CLIP2.000979_2 CLIP2.000979 intron 80 6.1
CLIP2.000980_1 CLIP2.000980 intron 80 6.1
LMJ.RY0402.076033_1 LMJ.RY0402.076033 3'UTR_intron 95 5.5
LMJ.RY0402.076033_2 LMJ.RY0402.076033 3'UTR 95 5.5
LMJ.RY0402.083945_1 LMJ.RY0402.083945 intron 73 5.5
LMJ.RY0402.118974_1 LMJ.RY0402.118974 intron 73 5.5
LMJ.RY0402.126377_1 LMJ.RY0402.126377 3'UTR 73 5.5
LMJ.RY0402.139178_1 LMJ.RY0402.139178 intron 73 5.5
LMJ.RY0402.140252_1 LMJ.RY0402.140252 intron 73 5.5
LMJ.RY0402.171658_2 LMJ.RY0402.171658 intron 95 5.5
LMJ.RY0402.171658_3 LMJ.RY0402.171658 intron 95 5.5
LMJ.RY0402.214073_1 LMJ.RY0402.214073 3'UTR 95 5.5
LMJ.RY0402.214073_2 LMJ.RY0402.214073 3'UTR 95 5.5
LMJ.RY0402.245334_1 LMJ.RY0402.245334 3'UTR 73 5.5
LMJ.RY0402.254881_1 LMJ.RY0402.254881 CDS 73 5.5

Gene Annotations

PFAM:PF00850
PANTHER: PTHR10625
KEGG_ec:EC:3.5.1.98
KEGG_orthology:
KOG:
Gene ontology terms::
Best arabidopsis TAIR name:AT4G33470
Best arabidopsis TAIR symbol:ATHDA14,hda14
Best arabidopsis TAIR defline:histone deacetylase 14
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Photosynthesis, screen 3 of 5 ( 78% confidence (FDR = 0.22))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.