Insertion junction: CLIP2.000220_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.000220
Chromosome:chromosome 6
Location:5988877
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g290400 HDA5 (1 of 1) PTHR10625:SF104 - HISTONE DEACETYLASE 6; RPD3/HDA1 type histone deacetylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATACCTGCTGCGGTGAGCCGCCGGTCTTACCAACCGGAAATCGCGCAAC
Internal bar code:ATCATAGTATTGGGTTGCTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:4385
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:63
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:63

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTATCCATGCAGCAACAC
Suggested primer 2:CCTCCACAGGTGCTGATTGT