Insertion junction: CLIP2.000220_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.000220
Chromosome:chromosome 6
Location:5988871
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g290400 HDA5 (1 of 1) PTHR10625:SF104 - HISTONE DEACETYLASE 6; RPD3/HDA1 type histone deacetylase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACTTCAGGTAACATCCGTAAACCGTCGCTTTGCTGCATCGCATACACTG
Internal bar code:GTGTGACAGTTCACGATTCCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2422
LEAP-Seq percent confirming:98.0392
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCACAGGTGCTGATTGT
Suggested primer 2:CGCTATCCATGCAGCAACAC