Insertion junction: CLIP2.000123_5

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000123
Chromosome:chromosome 16
Location:3227691
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g665800 SS4,SSS4 Soluble starch synthase IV; (1 of 2) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCCACTGGTGCCCCCAAACACGTCTCGCACGCACCTGAAGCCGTTGGG
Internal bar code:ACAAGAACGGGCACGGACCCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1389
LEAP-Seq percent confirming:97.2222
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:36

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGTAGGCCAGGAGCTGTG
Suggested primer 2:AAGAAGAACTCGTCCTGGCG