Insertion junction: CLIP2.000156_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.000156
Chromosome:chromosome 16
Location:3230756
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g665800 SS4,SSS4 Soluble starch synthase IV; (1 of 2) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGGTTTCGCCCTCAAACGCACCCCAAAAACGTGGTTCGAGGCGAGGTAC
Internal bar code:GTCGGAGATAGAGTGCGACTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2496
LEAP-Seq percent confirming:97.3333
LEAP-Seq n confirming:73
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:75

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGAGAAAAGGACGAGGGC
Suggested primer 2:ATAGCCGGGGTCAGTTTGTG