Insertion junction: CLIP2.000250_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000250
Chromosome:chromosome 11
Location:1367497
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467712 SAGA1 StArch Granules Abnormal 1; (1 of 3) IPR000104//IPR002044//IPR013784 - Antifreeze protein, type I // Carbohydrate binding module family 20 // Carbohydrate-binding-like fold 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCGGGGTCCCCTGTTATTGCGGCTTATGCAGTCATTGTGTTGGACTCTA
Internal bar code:CACTGCACTGTGGGTTAATAGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1665
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGAGTGGTTGTGCTGTTG
Suggested primer 2:CTCTCGCCTCACCTAGCATG