Gene: Cre11.g467712

Overview

Common name:	SAGA1
Defline:	StArch Granules Abnormal 1; (1 of 3) IPR000104//IPR002044//IPR013784 - Antifreeze protein, type I // Carbohydrate binding module family 20 // Carbohydrate-binding-like fold
Description:	Contains a starch binding motif and regulate starch sheath morphology; localizes to multiple puncta and streaks in the pyrenoid and physically interacts with the small and large subunits of RuBisCO
Synonyms:	Cre18.g743450.t1.1,g11642.t1
Chromosome:	chromosome 11

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction	Mutant Strain	Insertion Junction Feature	Confidence (%)	Genome Version
CLIP2.000120_1	CLIP2.000120	CDS	80	6.1
CLIP2.000120_2	CLIP2.000120	CDS	80	6.1
CLIP2.000217_1	CLIP2.000217	CDS	63	6.1
CLIP2.000250_1	CLIP2.000250	5'UTR	80	6.1
CLIP2.000250_2	CLIP2.000250	5'UTR	80	6.1
CLIP2.000351_1	CLIP2.000351	intron	80	6.1
CLIP2.000351_2	CLIP2.000351	intron	80	6.1
CLIP2.000399_1	CLIP2.000399	CDS	80	6.1
CLIP2.000467_1	CLIP2.000467	CDS	80	6.1
CLIP2.000505_1	CLIP2.000505	intron	63	6.1
CLIP2.000708_3	CLIP2.000708	intron	80	6.1
LMJ.RY0402.049105_1	LMJ.RY0402.049105	intron	73	5.5
LMJ.RY0402.060639_1	LMJ.RY0402.060639	intron	73	5.5
LMJ.RY0402.069707_1	LMJ.RY0402.069707	intron	73	5.5
LMJ.RY0402.100268_1	LMJ.RY0402.100268	intron	95	5.5
LMJ.RY0402.100268_2	LMJ.RY0402.100268	intron	95	5.5
LMJ.RY0402.107574_1	LMJ.RY0402.107574	CDS	73	5.5
LMJ.RY0402.129134_1	LMJ.RY0402.129134	intron	73	5.5
LMJ.RY0402.134339_1	LMJ.RY0402.134339	intron	95	5.5
LMJ.RY0402.134339_2	LMJ.RY0402.134339	intron	95	5.5
LMJ.RY0402.157684_1	LMJ.RY0402.157684	intron	73	5.5
LMJ.RY0402.161852_1	LMJ.RY0402.161852	intron	95	5.5
LMJ.RY0402.161852_2	LMJ.RY0402.161852	intron	95	5.5
LMJ.RY0402.177151_1	LMJ.RY0402.177151	intron	73	5.5
LMJ.RY0402.201797_1	LMJ.RY0402.201797	intron	73	5.5
LMJ.RY0402.213494_2	LMJ.RY0402.213494	intron	95	5.5
LMJ.RY0402.213494_3	LMJ.RY0402.213494	intron	95	5.5
LMJ.RY0402.217623_1	LMJ.RY0402.217623	3'UTR	95	5.5
LMJ.RY0402.217623_2	LMJ.RY0402.217623	3'UTR	95	5.5
LMJ.RY0402.234911_1	LMJ.RY0402.234911	intron	73	5.5
LMJ.RY0402.237539_1	LMJ.RY0402.237539	intron	73	5.5
LMJ.RY0402.252585_1	LMJ.RY0402.252585	intron	73	5.5

Gene Annotations

PFAM:	PF00686
PANTHER:	PTHR18937
KEGG_ec:
KEGG_orthology:
KOG:	KOG0978
Gene ontology terms::	GO:0030246, GO:0042309, GO:0050825, GO:0050826, GO:2001070
Best arabidopsis TAIR name:	AT5G05180.1
Best arabidopsis TAIR symbol:
Best arabidopsis TAIR defline:
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Carbon concentrating mechanism, screen 3 of 11 ( 99% confidence (FDR = 1.8e-10))

Carbon concentrating mechanism, screen 4 of 11 ( 99% confidence (FDR = 1.5e-12))

Carbon concentrating mechanism, screen 5 of 11 ( 99% confidence (FDR = 2.4e-18))

High light, screen 1 of 2 ( 99% confidence (FDR = 1.2e-05))

High pH, screen 1 of 2 ( 99% confidence (FDR = 1.1e-05))

Hypoxic (low light), screen 1 of 1 ( 99% confidence (FDR = 2e-09))

Hypoxic and high light, screen 1 of 1 ( 99% confidence (FDR = 0.00017))

Photosynthesis, screen 1 of 5 ( 94% confidence (FDR = 0.053))

Photosynthesis, screen 2 of 5 ( 73% confidence (FDR = 0.27))

Photosynthesis, screen 3 of 5 ( 99% confidence (FDR = 0.0014))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.