Insertion junction: CLIP2.000505_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.000505
Chromosome:chromosome 11
Location:1369568
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre11.g467712 SAGA1 StArch Granules Abnormal 1; (1 of 3) IPR000104//IPR002044//IPR013784 - Antifreeze protein, type I // Carbohydrate binding module family 20 // Carbohydrate-binding-like fold intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGAATGGGTTTGGGAATGGGTTTGGGAATGGGTTTGGGTTTTCAGTTT
Internal bar code:CGTGGTTCCCGTCTTAGGGAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:406
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCGTGTTCACCTGTACA
Suggested primer 2:TTCACACGCCTGTACTCACC