Insertion junction: CLIP2.000258_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000258
Chromosome:chromosome 13
Location:2284750
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g578650 CPLD10,NUOAF5,HCF173 (1 of 1) PTHR10366//PTHR10366:SF343 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // SUBFAMILY NOT NAMED; PSII biogenesis protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTACTCCACTGAACCCCCTCTCTCAACCCTCCAGAACCCATTTCGCCA
Internal bar code:TATCAAACGGAAAGCCTATTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1009
LEAP-Seq percent confirming:68.9655
LEAP-Seq n confirming:20
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CACACGCAGCTTCATCATCG
Suggested primer 2:GGCTCAGTCAAGACCCTCAC