Gene: Cre13.g578650

Overview

Common name:CPLD10,NUOAF5,HCF173
Defline:(1 of 1) PTHR10366//PTHR10366:SF343 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // SUBFAMILY NOT NAMED; PSII biogenesis protein
Description:Arabidopsis homolog HCF173 is involved in psbA translation initiation; carries Rossman-fold domain; other domains show similarity to Mitochondrial complex I intermediate-associated protein 30 and NmrA negative transcriptional regulator protein family; conserved in the plant lineage and Diatoms
Synonyms:NUOAF5,CPLD10,g14215.t1
Chromosome:chromosome 13

Protein Localization

A plasmid for expressing Cre13.g578650 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre13.g578650-Venus-3xFLAG

No localization data is available in our datasets for this protein.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.000190_1 CLIP2.000190 intron 80 6.1
CLIP2.000256_1 CLIP2.000256 intron 80 6.1
CLIP2.000258_1 CLIP2.000258 intron 80 6.1
CLIP2.000258_2 CLIP2.000258 intron 80 6.1
CLIP2.000482_1 CLIP2.000482 intron 80 6.1
CLIP2.000482_2 CLIP2.000482 intron 80 6.1
CLIP2.000633_1 CLIP2.000633 intron 80 6.1
CLIP2.000633_2 CLIP2.000633 intron 80 6.1
CLIP2.000799_1 CLIP2.000799 intron 80 6.1
CLIP2.001080_1 CLIP2.001080 intron 80 6.1
CLIP2.047797_6 CLIP2.047797 5'UTR 80 6.1
CLIP2.047797_7 CLIP2.047797 5'UTR 80 6.1
LMJ.RY0402.048288_2 LMJ.RY0402.048288 CDS 95 5.5
LMJ.RY0402.087810_2 LMJ.RY0402.087810 3'UTR 95 5.5
LMJ.RY0402.087810_3 LMJ.RY0402.087810 3'UTR 95 5.5
LMJ.RY0402.106111_1 LMJ.RY0402.106111 intron 73 5.5
LMJ.RY0402.147962_1 LMJ.RY0402.147962 intron 73 5.5
LMJ.RY0402.164167_1 LMJ.RY0402.164167 intron 95 5.5
LMJ.RY0402.164167_2 LMJ.RY0402.164167 intron 95 5.5
LMJ.RY0402.178716_1 LMJ.RY0402.178716 intron 73 5.5
LMJ.RY0402.229399_2 LMJ.RY0402.229399 3'UTR 95 5.5
LMJ.RY0402.229399_3 LMJ.RY0402.229399 3'UTR 95 5.5
LMJ.RY0402.239593_1 LMJ.RY0402.239593 3'UTR 95 5.5
LMJ.RY0402.256127_1 LMJ.RY0402.256127 intron 95 5.5
LMJ.RY0402.256127_2 LMJ.RY0402.256127 intron 95 5.5

Gene Annotations

PFAM:PF05368, PF08547, PF13460
PANTHER: PTHR10366 PTHR10366:SF343
KEGG_ec:
KEGG_orthology:
KOG:KOG1203
Gene ontology terms::
Best arabidopsis TAIR name:AT1G16720
Best arabidopsis TAIR symbol:HCF173
Best arabidopsis TAIR defline:high chlorophyll fluorescence phenotype 173
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Photosynthesis, screen 1 of 5 ( 78% confidence (FDR = 0.22))
Photosynthesis, screen 5 of 5 ( 72% confidence (FDR = 0.28))
Photosynthesis or light sensitivity, screen 5 of 12 ( 76% confidence (FDR = 0.24))
Photosynthesis or light sensitivity, screen 8 of 12 ( 72% confidence (FDR = 0.28))
Photosynthesis or light sensitivity, screen 9 of 12 ( 84% confidence (FDR = 0.16))
Photosynthesis or light sensitivity, screen 10 of 12 ( 90% confidence (FDR = 0.1))
Photosynthesis or light sensitivity, screen 11 of 12 ( 84% confidence (FDR = 0.16))
Photosynthesis or light sensitivity, screen 12 of 12 ( 89% confidence (FDR = 0.11))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.