Insertion junction: CLIP2.000481_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000481
Chromosome:chromosome 1
Location:4200497
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g028350 DEG8 (1 of 2) PTHR22939:SF99 - PROTEASE DO-LIKE 8, CHLOROPLASTIC; Deg protease intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACAGTCATACCGCGCCCGGCCGCCCGCCCTGCTCCATTCTCCCCAACG
Internal bar code:GATAAGGTTTATATCTTCATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:982
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:CTAACCTGGAGGCACAGTGG
Suggested primer 2:ATCGGTGTGCTTGTCATCGT