Insertion junction: CLIP2.000558_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000558
Chromosome:chromosome 4
Location:3732024
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre04.g229300 RCA1 (1 of 4) IPR003959//IPR027417 - ATPase, AAA-type, core // P-loop containing nucleoside triphosphate hydrolase; RuBisCO activase 1, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCTCACCTTGGGCATGGCCACCTTCTGGCGGGCGTTGACCAGCTGCTG
Internal bar code:TCCATAGACTGTCATAGCTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:287
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGGTGTGTACAAGAACGA
Suggested primer 2:CCGAAACCACTTTGCAAGGG