Gene: Cre04.g229300
Overview
| Common name: | RCA1 |
| Defline: | (1 of 4) IPR003959//IPR027417 - ATPase, AAA-type, core // P-loop containing nucleoside triphosphate hydrolase; RuBisCO activase 1, chloroplastic |
| Description: | RubisCO activase, chloroplast precursor; required for optimal photosynthesis in a low CO2 atmosphere [PMID: 16667924; independent cDNA sequence: M62962]. |
| Synonyms: | g5019.t1 |
| Chromosome: | chromosome 4 |
Protein Localization
The plasmid for this gene is not available.
Imaged strain: CSI_FC2B03
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 48 hours.
Classification(s):
chloroplast/pyrenoid/pyrenoid matrix enriched
If you reference these protein localization data in a manuscript, please cite: Mackinder et al. 2017.
 |
| Venus Venus+Chlorophyll |
Protein-Protein Interactions
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000096_1 | CLIP2.000096 | 3'UTR | 80 | 6.1 |
| CLIP2.000359_1 | CLIP2.000359 | CDS | 80 | 6.1 |
| CLIP2.000558_1 | CLIP2.000558 | intron | 40 | 6.1 |
| CLIP2.000564_1 | CLIP2.000564 | intron | 80 | 6.1 |
| CLIP2.000564_2 | CLIP2.000564 | intron | 80 | 6.1 |
| CLIP2.000978_1 | CLIP2.000978 | intron | 63 | 6.1 |
| CLIP2.001012_1 | CLIP2.001012 | CDS | 80 | 6.1 |
| CLIP2.001012_2 | CLIP2.001012 | CDS | 80 | 6.1 |
| LMJ.RY0402.039365_1 | LMJ.RY0402.039365 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.039365_2 | LMJ.RY0402.039365 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.069226_1 | LMJ.RY0402.069226 | intron | 73 | 5.5 |
| LMJ.RY0402.093231_1 | LMJ.RY0402.093231 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.145927_3 | LMJ.RY0402.145927 | CDS | 73 | 5.5 |
| LMJ.RY0402.225716_1 | LMJ.RY0402.225716 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.225716_2 | LMJ.RY0402.225716 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.245576_1 | LMJ.RY0402.245576 | intron | 58 | 5.5 |
Gene Annotations
| PFAM: | PF00004 |
| PANTHER: | PTHR32429 PTHR32429:SF8 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | KOG0651 |
| Gene ontology terms:: | GO:0005524 |
| Best arabidopsis TAIR name: | AT2G39730 |
| Best arabidopsis TAIR symbol: | RCA |
| Best arabidopsis TAIR defline: | rubisco activase |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.