Insertion junction: LMJ.RY0402.039365_1

Overview

Insertion cassette:CIB1
Side of cassette:5'
Strand:+
Strain:LMJ.RY0402.039365
Chromosome:chromosome 4
Location:3732811
Confidence (%):95
Locus systematic id Locus common name Defline Feature
Cre04.g229300 RCA1 (1 of 4) IPR003959//IPR027417 - ATPase, AAA-type, core // P-loop containing nucleoside triphosphate hydrolase; RuBisCO activase 1, chloroplastic 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCTGGACGCATCATTCCTCGCCGCCAAGC
Internal bar code:GCCACAGGGCCGCCTTTCCATA

Confirmation - LEAP-Seq

LEAP-Seq distance:153
LEAP-Seq percent confirming:83.0645
LEAP-Seq n confirming:103
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:AAAAGCGGCTCTCAGTGGTA
Suggested primer 2:AGCTCACTGTTTGGTTCGCT