Insertion junction: CLIP2.001012_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001012
Chromosome:chromosome 4
Location:3731044
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g229300 RCA1 (1 of 4) IPR003959//IPR027417 - ATPase, AAA-type, core // P-loop containing nucleoside triphosphate hydrolase; RuBisCO activase 1, chloroplastic CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTCTTGATGATGTCGGAGGCCTCCCGGTAGCGGGTGCGGATCAGCTTG
Internal bar code:TGCTCGCGTGTTATTTGATGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2272
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:CCCGCTTTCCTGGACAAGAT
Suggested primer 2:CGCGTTCTACTCCCGCTTAT