Insertion junction: CLIP2.000978_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.000978
Chromosome:chromosome 4
Location:3730195
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre04.g229300 RCA1 (1 of 4) IPR003959//IPR027417 - ATPase, AAA-type, core // P-loop containing nucleoside triphosphate hydrolase; RuBisCO activase 1, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGCAACAACGCGCCCAGCTACAGCAAGGCGAGACTCACGTCAGCACGCC
Internal bar code:CGCTTCAATGCTATTTTAAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:129
LEAP-Seq percent confirming:12.5
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:ATCTTGTCCAGGAAAGCGGG
Suggested primer 2:TGAAGAGCAGGTGAGGCTTG