Insertion junction: CLIP2.000593_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.000593
Chromosome:chromosome 6
Location:2966987
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g273700 HCF136 (1 of 1) PTHR32010//PTHR32010:SF6 - FAMILY NOT NAMED // PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC; Photosystem II stability/assembly factor HCF136 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGCGAAACTCGGCACCCCCGACCAGTCCCCCGCGCCGGCTTGGGACG
Internal bar code:CCATGGTTTTCCCGTGATTACT

Confirmation - LEAP-Seq

LEAP-Seq distance:1532
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TGTTGGTGTGCAGACTTGGT
Suggested primer 2:GAGGTCAGTCGCCTATGCTC