Gene: Cre06.g273700
Overview
| Common name: | HCF136 |
| Defline: | (1 of 1) PTHR32010//PTHR32010:SF6 - FAMILY NOT NAMED // PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC; Photosystem II stability/assembly factor HCF136 |
| Description: | homolog of HCF136/Ycf48, thylakoid-lumen beta-propeller type protein involved in association of the pre-D2-Cytb559-precomplex (pre-D2) and pD1-PsbI precomplex (pre-D1) |
| Synonyms: | Cre06.g273700.t1.1,g6140.t1,HCF136 |
| Chromosome: | chromosome 6 |
Protein Localization
A plasmid for expressing Cre06.g273700 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre06.g273700-Venus-3xFLAG
Imaged strain: CSI_LW09C11
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/pyrenoid/pyrenoid traversing enriched
chloroplast/not homogeneous/enriched in thylakoid
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre01.g028350 | DEG8 | Cre06.g273700 | HCF136 | Wang et al. 2023 |
| Cre08.g362900 | PSBP4 | Cre06.g273700 | HCF136 | Mackinder et al. 2017 |
| Cre12.g509050 | PPL1,PSBP3 | Cre06.g273700 | HCF136 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.000413_1 | CLIP2.000413 | 3'UTR | 80 | 6.1 |
| CLIP2.000413_2 | CLIP2.000413 | 3'UTR | 80 | 6.1 |
| CLIP2.000462_1 | CLIP2.000462 | 3'UTR | 80 | 6.1 |
| CLIP2.000462_2 | CLIP2.000462 | 3'UTR | 80 | 6.1 |
| CLIP2.000552_1 | CLIP2.000552 | intron | 80 | 6.1 |
| CLIP2.000552_2 | CLIP2.000552 | intron | 80 | 6.1 |
| CLIP2.000593_1 | CLIP2.000593 | intron | 80 | 6.1 |
| CLIP2.000593_2 | CLIP2.000593 | intron | 80 | 6.1 |
| CLIP2.001089_1 | CLIP2.001089 | intron | 80 | 6.1 |
| CLIP2.001089_2 | CLIP2.001089 | intron | 80 | 6.1 |
| LMJ.RY0402.044215_1 | LMJ.RY0402.044215 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.067452_1 | LMJ.RY0402.067452 | CDS | 58 | 5.5 |
| LMJ.RY0402.083043_2 | LMJ.RY0402.083043 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.119871_1 | LMJ.RY0402.119871 | intron | 73 | 5.5 |
Gene Annotations
| PFAM: | PF14870 |
| PANTHER: | PTHR32010 PTHR32010:SF6 |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | AT5G23120 |
| Best arabidopsis TAIR symbol: | HCF136 |
| Best arabidopsis TAIR defline: | photosystem II stability/assembly factor, chloroplast (HCF136) |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.