Insertion junction: CLIP2.001089_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.001089
Chromosome:chromosome 6
Location:2966985
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g273700 HCF136 (1 of 1) PTHR32010//PTHR32010:SF6 - FAMILY NOT NAMED // PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC; Photosystem II stability/assembly factor HCF136 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAACGCAGACACCAGCCTTTCCACGGCACTGCCCCAGCCACCGCCCCA
Internal bar code:TGGGTGCGAAATGGTTCTGTGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1550
LEAP-Seq percent confirming:76.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:GAGGTCAGTCGCCTATGCTC
Suggested primer 2:TGTTGGTGTGCAGACTTGGT