Insertion junction: CLIP2.000896_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.000896
Chromosome:chromosome 16
Location:3226300
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g665800 SS4,SSS4 Soluble starch synthase IV; (1 of 2) PTHR12526:SF304 - STARCH SYNTHASE 4, CHLOROPLASTIC/AMYLOPLASTIC-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCAACCCTTGGCCAGCTAGGGCACGGCACACGTGCCCCATCCCACACA
Internal bar code:AATTAGAAGTATACGAGAGGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:5053
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:59
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:59

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGTAGGCCTGGACTACAG
Suggested primer 2:CACAGCTCCTGGCCTACAAA