Insertion junction: CLIP2.001011_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.001011
Chromosome:chromosome 8
Location:1084985
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g362450 AMYA2,AMA2 Alpha-amylase 2; (1 of 1) PTHR10357//PTHR10357:SF118 - ALPHA-AMYLASE // ALPHA-AMYLASE 2-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAAC
Internal bar code:GAGTGAACAGAGACCCATATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3141
LEAP-Seq percent confirming:95.0
LEAP-Seq n confirming:57
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:60

Suggested primers for confirmation by PCR

Suggested primer 1:GACCCTCAAGTACGTGCGAA
Suggested primer 2:TTGCATCGCCACAAACAAGG