Insertion junction: CLIP2.001083_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.001083
Chromosome:chromosome 3
Location:1915298
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g155001 ISA1,STA7 (1 of 1) PTHR10357:SF169 - ISOAMYLASE 1, CHLOROPLASTIC; Isoamylase, starch debranching enzyme 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAACAAGCGGGTTTAATAGGGGGCGCGTGTAGGGGTGCTCGAAGTGTGT
Internal bar code:TGGGGGGCGGAGTCGTCTGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:404
LEAP-Seq percent confirming:31.25
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CGCTCACAGTCCTGTCACAT
Suggested primer 2:ATTGCGAGGTGGAAAGGGAG