Gene: Cre03.g155001

Overview

Common name:ISA1,STA7
Defline:(1 of 1) PTHR10357:SF169 - ISOAMYLASE 1, CHLOROPLASTIC; Isoamylase, starch debranching enzyme 1
Description:Misplaced, loosely branched chains are trimmed by this DBE from a maturing structure to allow polysaccharide crystallization/ Posewitz et al. 24 [PMID: 1526933] showed that the STA7 locus corresponds to this gene. Mutants at this locus are starch-deficient;
Synonyms:g3160.t1,STA7
Chromosome:chromosome 3

Protein Localization

We did not create a plasmid for this gene.

Protein-Protein Interactions

We did not determine any protein-protein interactions for this gene.

Mutant Strains

Insertion Junction Mutant Strain Insertion Junction Feature Confidence (%) Genome Version
CLIP2.000112_1 CLIP2.000112 intron 80 6.1
CLIP2.000112_2 CLIP2.000112 intron 80 6.1
CLIP2.000141_1 CLIP2.000141 CDS 80 6.1
CLIP2.000141_2 CLIP2.000141 CDS 80 6.1
CLIP2.000409_1 CLIP2.000409 intron 80 6.1
CLIP2.000409_2 CLIP2.000409 intron 80 6.1
CLIP2.000988_1 CLIP2.000988 intron 80 6.1
CLIP2.000988_2 CLIP2.000988 intron 80 6.1
CLIP2.001083_1 CLIP2.001083 intron 80 6.1
CLIP2.001083_2 CLIP2.001083 intron 80 6.1
CLIP2.055326_1 CLIP2.055326 3'UTR 80 6.1
CLIP2.065732_2 CLIP2.065732 intron 40 6.1
LMJ.RY0402.052227_1 LMJ.RY0402.052227 intron 73 5.5
LMJ.RY0402.059066_1 LMJ.RY0402.059066 3'UTR 95 5.5
LMJ.RY0402.070346_1 LMJ.RY0402.070346 intron 58 5.5
LMJ.RY0402.077476_1 LMJ.RY0402.077476 3'UTR 73 5.5
LMJ.RY0402.133722_1 LMJ.RY0402.133722 intron 73 5.5
LMJ.RY0402.133753_1 LMJ.RY0402.133753 3'UTR 73 5.5
LMJ.RY0402.143446_1 LMJ.RY0402.143446 intron 73 5.5
LMJ.RY0402.166642_1 LMJ.RY0402.166642 intron 73 5.5
LMJ.RY0402.185729_1 LMJ.RY0402.185729 intron 73 5.5
LMJ.RY0402.219505_1 LMJ.RY0402.219505 intron 73 5.5
LMJ.RY0402.232302_1 LMJ.RY0402.232302 3'UTR 58 5.5
LMJ.RY0402.237800_1 LMJ.RY0402.237800 3'UTR 73 5.5
LMJ.RY0402.251495_1 LMJ.RY0402.251495 intron 73 5.5

Gene Annotations

PFAM:PF00128, PF02922
PANTHER: PTHR10357 PTHR10357:SF169
KEGG_ec:3.2.1.-
KEGG_orthology:K01214
KOG:KOG0470
Gene ontology terms::GO:0003824, GO:0004553, GO:0005975, GO:0043169
Best arabidopsis TAIR name:AT2G39930
Best arabidopsis TAIR symbol:ATISA1,ISA1
Best arabidopsis TAIR defline:isoamylase 1
Phytozome Locus Page

Phenotypes

Mutants in this gene exhibit a phenotype under the following conditions:

Carbon concentrating mechanism, screen 3 of 11 ( 71% confidence (FDR = 0.29))

Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.

If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.