Insertion junction: CLIP2.001291_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.001291
Chromosome:chromosome 12
Location:4359480
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g519300 TEF9 (1 of 2) PF13301 - Protein of unknown function (DUF4079) (DUF4079); conserved expressed protein, possible chloroplast localization 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCCCGCACAGACCGGCTGAGTGGCTCTGGTACAGTGGTGCACACTGAT
Internal bar code:AGGAATTGTCCTTCGGCGCTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1273
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:CGCAAGCTTGACTGCACTTT
Suggested primer 2:CGTGGACGTGTGTGTCTACA